“Recommendations on e-infrastructures for next-generation sequencing” O. Spjuth, E. Bongcam-Rudloff, J. Dahlberg, M. Dahlö, A. Kallio, L. Pireddu, F. Vezzi, and E. Korpelainen, GigaScience,… Read More »eSSENCE and SeRC researchers publish manuscript on “Recommendations on e-infrastructures for next-generation sequencing”
The citation for his nomination reads; “Bo Kågström is Professor of Numerical Analysis and Parallel Computing and Director of High Performance Computing Center North (HPC2N)… Read More »Bo Kågström appointed SIAM Fellow 2016
Enabling integrative cross-biobank research: the SAIL method for harmonizing and linking biomedical and clinical data across disparate data archives O. Spjuth, J. Hastings, J. Dietrich,… Read More »eSSENCE scientist Ola Spjuth publishes manuscript on cross-biobank data integration
In the EU COST Action SeqAhead, researchers lead by eSSENCE researcher Ola Spjuth have conducted a large survey on the use of scientific workflows in… Read More »eSSENCE researchers publish article on workflows for automating data-intensive bioinformatics
SAVE-THE-DATE Welcome to the eSSENCE conference “Swedish e-Science Academy”: Date: 14-15 October, 2015 (lunch to lunch) Place: Arlanda
Software X: A new open-access journal from Elsevier for scientific software. The journal publishes peer-reviewed software and also allows for post-publication updates and metadata. http://www.journals.elsevier.com/softwarex/
Two presentations from eSSENCE scientists Anders Hast and Torbjörn Nordling from Uppsala University have been accepted at the “11th IEEE International Conference on e-Science” in… Read More »eSSENCE at the 11th IEEE e-Science Conference
Researchers affiliated with UPPMAX and financed by the Strategic Research Program eSSENCE published a report on the applicability of Hadoop for analyzing next-generation sequencing data.
Siretskiy A, Sundqvist T, Voznesenskiy M, Spjuth O.
A quantitative assessment of the Hadoop framework for analyzing massively parallel DNA sequencing data.
Gigascience. 2015 Jun 4; 4:26. doi: 10.1186/s13742-015-0058-5
http://www.gigasciencejournal.com/content/4/1/26
Read More »UPPMAX publishes report on hadoop for NGS data analysis
The Swedish e-Science Education graduate school (SeSE) now announces its graduate courses of autumn 2015. The courses are listed at the SeSE website: http://sese.nu/courses-autumn-2015/ SeSE gives… Read More »Swedish e-Science Education graduate school (SeSE) courses: Autumn 2015
