eSSENCE Publications
Below you will find a list of all peer-reviewed publications in scientific journals and conference proceedings from the eSSENCE research groups in 2010-2014.
Acknowledgements and logos
We ask all eSSENCE researchers to acknowledge the research program in their publications/presentations:
We ask all eSSENCE researchers to acknowledge the research program in their publications/presentations:
For work directly funded by eSSENCE:
This work was supported by the Swedish strategic research programme eSSENCE.
For work originating from the eSSENCE environment, irrespective funding:
This work forms part of the Swedish strategic research programme eSSENCE.
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| Authors | Title | Journal / Conference | Year |
| Anik Sen, Pavlin D. Mitev, Anders Eriksson, and Kersti Hermansson | H-bond and electric field correlations for water in highly hydrated crystals | International Journal of Quantum Chemistry, vol. 116, p. 67-80 | 2016 |
| M. J. Wolf, J. Kullgren and K. Hermansson | Comment on Clustering of Oxygen Vacancies at CeO2(111): Critical Role of Hydroxyls" | Physical Review Letters, vol. 117, p. 279601 | 2016 |
| M. Gyoeroek A. Kaiser, I. Sukuba, J.Urban, K. Hermansson, and M. Probst | Surface binding energies of beryllium/tungsten alloys | Journal of Nuclear Materials, vol. 472, p. 76-81 | 2016 |
| Joakim Gradin (for the ATLAS collaboration) | The design of a fast Level-1 track trigger for the High Luminosity Upgrade of ATLAS | 4th Large Hadron Collider Physics Conference (LHCP 2016), vol. , p. | 2016 |
| C.Xu, E.Källström, T.Risch, John Lindström, L.Håkansson, and J.Larsson | Scalable Validation of Industrial Equipment using a Functional DSMS | Journal of Intelligent Information Systems, vol. , p. | 2016 |
| S.Stefanova and T.Risch | Scalable Long-term Preservation of Relational Data through SPARQL queries | Semantic Web Journal, vol. 7, p. 117-137 | 2016 |
| S.Badiozamany, K.Orsborn, and T.Risch | Framework for real-time clustering over sliding windows | 28th International Conference on Scientific and Statistical Database Management (SSDBM 2016), vol. , p. | 2016 |
| John H. Abel, Brian Drawert, Andreas Hellander, and Linda R. Petzold. | GillesPy: A Python package for stochastic model building and simulation | IEEE Life Sciences Letters,, vol. 2, p. 35-38 | 2016 |
| Brian Drawert, Andreas Hellander, Ben Bales, Debjani Banerjee, Giovanni Bellesia, Bernie J. Daigle Jr., Geoffrey Douglas, Mengyuan Gu, Anand Gupta, Stefan Hellander, Chris Horuk, Dibyendu Nath, Aviral Takkar, Sheng Wu, Per Lötstedt, Chandra Krintz, and Linda R. Petzold. | Stochastic Simulation Service: Bridging the gap between the computational expert and the biologist | PloS Computational Biology,, vol. 12, p. - | 2016 |
| Anastasia Kruchinina, Elias Rudberg, and Emanuel H. Rubensson. | Parameterless stopping criteria for recursive density matrix expansions | Journal of Chemical Theory and Computation,, vol. 12, p. 5788-5802 | 2016 |
| Philipp Birken, Jonathan Bull, and Antony Jameson. | A note on terminology in multigrid methods | Proceedings in Applied Mathematics and Mechanics: PAMM,, vol. 16, p. 721-722 | 2016 |
| Mikhail Poluektov, Olle Eriksson, and Gunilla Kreiss. | Scale transitions in magnetisation dynamics | Communications in Computational Physics,, vol. 20, p. 969-988 | 2016 |
| Markus Kowalewski, Elisabeth Larsson, and Alfa Heryudono. | An adaptive interpolation scheme for molecular potential energy surfaces | Journal of Chemical Physics,, vol. 145, p. 084104:1-10 | 2016 |
| Stefan Widgren, Stefan Engblom, Pavol Bauer, Jenny Frössling, Ulf Emanuelson, and Ann Lindberg. | Data-driven network modelling of disease transmission using complete population movement data: spread of VTEC O157 in Swedish cattle | Veterinary research (Print),, vol. 47, p. 81:1-17 | 2016 |
| Marketa Kaucka, Evgeny Ivashkin, Daniel Gyllborg, Tomas Zikmund, Marketa Tesarova, Jozef Kaiser, Meng Xie, Julian Petersen, Vassilis Pachnis, Silvia K. Nicolis, Tian Yu, Paul Sharpe, Ernest Arenas, Hjalmar Brismar, Hans Blom, Hans Clevers, Ueli Suter, Andrei S. Chagin, Kaj Fried, Andreas Hellander, and Igor Adameyko. | Analysis of neural crest-derived clones reveals novel aspects of facial development | Science Advances,, vol. 2, p. e1600060:1-16 | 2016 |
| Anna Munke, Jakob Andreasson, Andrew Aquila, Salah Awel, Kartik Ayyer, Anton Barty, Richard J. Bean, Peter Berntsen, Johan Bielecki, Sébastien Boutet, Maximilian Bucher, Henry N. Chapman, Benedikt J. Daurer, Hasan DeMirci, Veit Elser, Petra Fromme, Janos Hajdu, Max F. Hantke, Akifumi Higashiura, Brenda G. Hogue, Ahmad Hosseinizadeh, Yoonhee Kim, Richard A. Kirian, Hemanth K. N. Reddy, Ti-Yen Lan, Daniel S. D. Larsson, Haiguang Liu, N. Duane Loh, Filipe R. N. C. Maia, Adrian P. Mancuso, Kerstin Mühlig, Atsushi Nakagawa, Daewoong Nam, Garrett Nelson, Carl Nettelblad, Kenta Okamoto, Abbas Ourmazd, Max Rose, Gijs van der Schot, Peter Schwander, M. Marvin Seibert, Jonas A. Sellberg, Raymond G. Sierra, Changyong Song, Martin Svenda, Nicusor Timneanu, Ivan A. Vartanyants, Daniel Westphal, Max O. Wiedorn, Garth J. Williams, Lourdu Xavier Paulraj, Chun Hong Yoon, and James Zook. | Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source | Scientific Data,, vol. 3, p. 160064:1-12 | 2016 |
| Bernd Brumm and Emil Kieri. | A matrix-free Legendre spectral method for initial–boundary value problems | Electronic Transactions on Numerical Analysis,, vol. 45, p. 283-304 | 2016 |
| Emanuel H. Rubensson and Elias Rudberg. | Locality-aware parallel block-sparse matrix–matrix multiplication using the Chunks and Tasks programming model | Parallel Computing,, vol. 57, p. 87-106 | 2016 |
| Simon Sticko and Gunilla Kreiss. | A stabilized Nitsche cut element method for the wave equation | Computer Methods in Applied Mechanics and Engineering,, vol. 309, p. 364-387 | 2016 |
| Anders M. N. Niklasson, Susan M. Mniszewski, Christian F. A. Negre, Marc J. Cawkwell, Pieter J. Swart, Jamal Mohd-Yusof, Timothy C. Germann, Michael E. Wall, Nicolas Bock, Emanuel H. Rubensson, and Hristo Djidjev. | Graph-based linear scaling electronic structure theory | Journal of Chemical Physics,, vol. 144, p. 234101:1-8 | 2016 |
| Lars Josef Höök and Erik Lindström. | Efficient computation of the quasi likelihood function for discretely observed diffusion processes | Computational Statistics & Data Analysis,, vol. 103, p. 426-437 | 2016 |
| Brian Drawert, Michael Trogdon, Salman Toor, Linda Petzold, and Andreas Hellander. | MOLNs: A cloud platform for interactive, reproducible, and scalable spatial stochastic computational experiments in systems biology using PyURDME | SIAM Journal on Scientific Computing,, vol. 38, p. C179-C202 | 2016 |
| Emilie Blanc, Stefan Engblom, Andreas Hellander, and Per Lötstedt. | Mesoscopic modeling of stochastic reaction–diffusion kinetics in the subdiffusive regime | Multiscale Modeling & simulation,, vol. 14, p. 668-707 | 2016 |
| Benedikt J. Daurer, Max F. Hantke, Carl Nettelblad, and Filipe R. N. C. Maia. | Hummingbird: monitoring and analyzing flash X-ray imaging experiments in real time | Journal of applied crystallography,, vol. 49, p. 1042-1047 | 2016 |
| Pavol Bauer, Stefan Engblom, and Stefan Widgren. | Fast event-based epidemiological simulations on national scales | The international journal of high performance computing applications,, vol. 30, p. 438-453 | 2016 |