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January 2015

Tutorial: RNA-seq data analysis using Chipster

20 January, 2015
Uppsala Biomedical Center (BMC), Computer room A6:003

January 20, 2015, at 13.00 - 16.00 Computer room A6:003, Uppsala Biomedical Center (BMC) Course leader: Eija Korpelainen, CSC - IT Center for Science, Finland This tutorial covers quality control (FastQC and PRINSEQ), alignment (TopHat) and quantification (HTSeq) as well as differential expression analysis (edgeR and DESeq) and genome browser visualization. The user-friendly Chipster software is used in the exercises, so no previous knowledge of Unix or R is required and the tutorial is thus suitable for everybody. Participants may…

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